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Schrodinger LLC pymol software
Pymol Software, supplied by Schrodinger LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pymol+software/pymol+molecular+graphics+system/pm40614108-404-4-10
Average 90 stars, based on 1 article reviews
pymol software - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Hydrogen sulfide promotes lateral root formation in peach through persulfidation of SnRK1α kinase.
Article Snippet: The predicted structure of PpSnRK1a was visualised using PyMOL 4.6 (Schrodinger, LLC) software.

Software:

Article Title: The horizontally transferred gene, CsMTAN, rewired purine traffic to build caffeine factories in tea leaves.
Article Snippet: Purine‐related metabolites are central to primary metabolic pathways in plants and serve as precursors for purine alkaloid biosynthesis in caffeinated species such as tea plants (Camellia sinensis).. In this study, metabolite profiling of two tissues (young and mature leaves) was performed across 183 genetically diverse tea accessions, identifying and quantifying 10 purine alkaloid‐related metabolites.. Metabolite genome‐wide association studies revealed 17 significant loci associated with these metabolites, including both known loci such as caffeine synthase and 16 novel loci (P< 1.05× 10).

Article Title: Tethered release of the pseudorabies virus deubiquitinase from the capsid promotes enzymatic activity.
Article Snippet: Herpesviruses carry an assortment of proteins in the interstitial space between the capsid and membrane envelope, collectively referred to as the tegument.. Upon virion fusion with a cell, envelope integrity is disrupted, and many tegument constituents disperse into the cytosol to carry out individual effector functions, while others direct transport of the capsid to the nucleus.. To gain insight into the tegument dynamics that occur with disruption of envelope integrity, we used a combination of single-particle fluorescence and biochemical approaches that leveraged the previously established use of n-ethylmaleimide to inhibit virion dynamics.

Article Title: Potential roles of the sirtuins in promoting longevity for larger Argopecten scallops
Article Snippet: .. The final structures were visualized using PyMOL software (The PyMOL Molecular Graphics System, Schrodinger, LLC) ( https://pymol.org/edu/ ). .. Subcellular localization prediction for the SIRT1 and SIRT6 genes was carried out using both WoLF PSORT ( https://wolfpsort.hgc.jp/ ) and Cell-PLoc2.0 (http: // www.csbio.sjtu.edu.cn/bioinf/Cell-PLoc-2/ ), and SIRT1 and SIRT6-2 were selected for validation of their subcellular localization in the two scallop species.

Article Title: Concept of Targeted Drug Conjugate and Its Application in Reversing Drug Resistance.
Article Snippet: Small-molecule targeted drugs have become the mainstream cancer treatment due to their specific therapy.. However, drug resistance inevitably happens to cancer patients.. Herein, we propose the “targeted drug conjugate (TDC)” concept to design drugs that enhance antitumor activity, reduce toxicity, and reverse resistance.

Article Title: Potential roles of the sirtuins in promoting longevity for larger Argopecten scallops
Article Snippet: .. The final structures were visualized using PyMOL software (The PyMOL Molecular Graphics System, Schrodinger, LLC) (https:// pymol. org/ edu/). .. Subcellular localization prediction for the SIRT1 and SIRT6 genes was carried out using both WoLF PSORT (https:// wolfp sort. hgc. jp/) and Cell-PLoc2.0 (http: //www. csbio. sjtu. edu. cn/ bioinf/ Cell- PLoc-2/), and SIRT1 and SIRT6-2 were selected for validation of their subcellular localization in the two scallop species.

Article Title: Biochemical Characterization and Polyester-Binding/Degrading Capability of Two Cutinases from Aspergillus fumigatus
Article Snippet: .. Structures were visualized using PyMOL software (version 2.2.0, Schrodinger, LLC, New York, NY, USA). ..

Generated:

Article Title: Tethered release of the pseudorabies virus deubiquitinase from the capsid promotes enzymatic activity.
Article Snippet: Herpesviruses carry an assortment of proteins in the interstitial space between the capsid and membrane envelope, collectively referred to as the tegument.. Upon virion fusion with a cell, envelope integrity is disrupted, and many tegument constituents disperse into the cytosol to carry out individual effector functions, while others direct transport of the capsid to the nucleus.. To gain insight into the tegument dynamics that occur with disruption of envelope integrity, we used a combination of single-particle fluorescence and biochemical approaches that leveraged the previously established use of n-ethylmaleimide to inhibit virion dynamics.



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